3VAL	Rna Binding Protein Dna	date	Dec 29, 2011
title	Structure Of U2af65 Variant With Bru5c1 Dna
authors	J.L.Jenkins, K.H.Frato, C.L.Kielkopf
compound		source
Molecule: Splicing Factor U2af 65 Kda Subunit Chain: A, B, D, I Fragment: Rna Binding Domains 1 And 2 Synonym: U2 Auxiliary Factor 65 Kda Subunit, Hu2af(65), Hu2 Snrnp Auxiliary Factor Large Subunit; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: U2af2, U2af65 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
Molecule: Dna (5'-D(Cupupup(Bru)Pupu)-3') Chain: E, H, K, P Engineered: Yes		Synthetic: Yes Other_details: Dna
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.271
crystal cell	length a length b length c angle alpha angle beta angle gamma 37.583 137.081 83.962 90.00 102.97 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BRU, DIO, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D, I, B
Primary reference	U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs., Jenkins JL, Agrawal AA, Gupta A, Green MR, Kielkopf CL, Nucleic Acids Res. 2013 Feb 1. PMID:23376934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk] Biological Unit Coordinates (3val.pdb1.gz) 122 Kb LPC: Ligand-Protein Contacts for 3VAL CSU: Contacts of Structural Units for 3VAL Structure Factors (572 Kb) Retrieve 3VAL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VAL from S2C, [Save to disk] Re-refined 3val structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VAL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VAL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VAL, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3val_D] [3val_I] [3val_B] [3val_H] [3val] [3val_E] [3val_K] [3val_P] [3val_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VAL: [RRM ] by SMART

Other resources with information on 3VAL

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