3VBD Lyase Lyase Inhibitor date Jan 02, 2012
title Complex Of Human Carbonic Anhydrase II With 4-(6-Methoxy-3,4 Dihydroisoquinolin-1-Yl)Benzenesulfonamide
authors P.Mader, J.Brynda, P.Rezacova
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.010 41.180 71.760 90.00 104.33 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand 0FZ, GOL, MBO, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, Structure-Activity Relationship Studies, and X-ray Crystallographic Analysis of Arylsulfonamides as Potent Carbonic Anhydrase Inhibitors., Gitto R, Damiano FM, Mader P, De Luca L, Ferro S, Supuran CT, Vullo D, Brynda J, Rezacova P, Chimirri A, J Med Chem. 2012 Apr 6. PMID:22443141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (3vbd.pdb1.gz) 113 Kb
  • LPC: Ligand-Protein Contacts for 3VBD
  • CSU: Contacts of Structural Units for 3VBD
  • Structure Factors (916 Kb)
  • Retrieve 3VBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VBD from S2C, [Save to disk]
  • Re-refined 3vbd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VBD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VBD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vbd] [3vbd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VBD: [Carb_anhydrase ] by SMART
    • Other resources with information on 3VBD
  • Community annotation for 3VBD at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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