3VD1 Antitumor Protein Dna date Jan 04, 2012
title Structure Of P73 Dna Binding Domain Tetramer Modulates P73 Transactivation
authors A.S.Ethayathulla, P.W.Tse, S.Nguyen, H.Viadiu
compound source
Molecule: Tumor Protein P73
Chain: A, B, C, D, I, J, K, L
Fragment: Unp Residue 115-312
Synonym: P53-Like Transcription Factor, P53-Related Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: Dna (5'-D(Cpgpgpgpcpaptpgpcpcpcpg)-3'
Chain: E, F, G, H, M, N, O, P
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.239 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.540 104.200 123.223 90.00 96.55 90.00
method X-Ray Diffractionresolution 2.95 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, J, K, B, C, D, I, L


Primary referenceStructure of p73 DNA-binding domain tetramer modulates p73 transactivation., Ethayathulla AS, Tse PW, Monti P, Nguyen S, Inga A, Fronza G, Viadiu H, Proc Natl Acad Sci U S A. 2012 Apr 2. PMID:22474346
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]
  • Biological Unit Coordinates (3vd1.pdb1.gz) 148 Kb
  • Biological Unit Coordinates (3vd1.pdb2.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 3VD1
  • CSU: Contacts of Structural Units for 3VD1
  • Structure Factors (345 Kb)
  • Retrieve 3VD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VD1 from S2C, [Save to disk]
  • Re-refined 3vd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VD1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VD1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3vd1, region D:158-289 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vd1_L] [3vd1_P] [3vd1_C] [3vd1_H] [3vd1_D] [3vd1_J] [3vd1_K] [3vd1_O] [3vd1_G] [3vd1_I] [3vd1_F] [3vd1_M] [3vd1_E] [3vd1_A] [3vd1_B] [3vd1_N] [3vd1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VD1
  • Community annotation for 3VD1 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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