3VDP date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand IMD, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A, D, B


Primary referenceRecOR complex including RecR N-N dimer and RecO monomer displays a high affinity for ssDNA., Tang Q, Gao P, Liu YP, Gao A, An XM, Liu S, Yan XX, Liang DC, Nucleic Acids Res. 2012 Nov 1;40(21):11115-25. doi: 10.1093/nar/gks889. Epub 2012, Sep 27. PMID:23019218
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (3vdp.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (3vdp.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 3VDP
  • CSU: Contacts of Structural Units for 3VDP
  • Structure Factors (493 Kb)
  • Retrieve 3VDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VDP from S2C, [Save to disk]
  • Re-refined 3vdp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vdp] [3vdp_A] [3vdp_B] [3vdp_C] [3vdp_D]
  • SWISS-PROT database:
  • Domains found in 3VDP: [HhH1] [TOPRIM ] by SMART

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