3VEA	Dna Binding Protein Dna	date	Jan 07, 2012
title	Crystal Structure Of Matp-Mats23mer
authors	M.A.Schumacher
compound		source
Molecule: Macrodomain Ter Protein Chain: B, A Synonym: Matp Engineered: Yes		Organism_scientific: Yersinia Pestis Organism_taxid: 632 Gene: Matp, Y2737, Ypo1433, Yp_0877 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 5'-D(Apgptptpcpgptpgpapcpaptptpgpt Gpapapcpt)-3'; Chain: N Engineered: Yes Other_details: Mats Strand 2		Synthetic: Yes
Molecule: 5'-D(Apgptptpcpgptpgpapcpapaptpgpt Gpapapcpt)-3'; Chain: M Engineered: Yes Other_details: Mats Strand 1		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.222 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.980 111.310 169.140 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
Gene	YP
Gene Ontology	Chain Function Process Component A, B
Primary reference	Molecular Basis for a Protein-Mediated DNA-Bridging Mechanism that Functions in Condensation of the E. coli Chromosome., Dupaigne P, Tonthat NK, Espeli O, Whitfill T, Boccard F, Schumacher MA, Mol Cell. 2012 Oct 16. pii: S1097-2765(12)00785-X. doi:, 10.1016/j.molcel.2012.09.009. PMID:23084832

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (3vea.pdb1.gz) 139 Kb CSU: Contacts of Structural Units for 3VEA Structure Factors (163 Kb) Retrieve 3VEA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VEA from S2C, [Save to disk] Re-refined 3vea structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VEA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VEA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VEA, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vea] [3vea_B] [3vea_A] [3vea_N] [3vea_M] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VEA

Community annotation for 3VEA at PDBWiki (http://pdbwiki.org)

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