3VHV Transcription Inhibitor date Sep 07, 2011
title Mineralocorticoid Receptor Ligand-Binding Domain With Non-St Antagonist
authors S.Sogabe, N.Habuka
compound source
Molecule: Mineralocorticoid Receptor
Chain: A
Fragment: Ligand-Binding Domain, Unp Residues 727-984
Synonym: Mr, Nuclear Receptor Subfamily 3 Group C Member 2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c2, Mcr, Mlr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 32
R_factor 0.141 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.612 62.612 75.504 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.35 Å
ligand EDO, K, LD1, LD2 enzyme
note 3VHV is a representative structure
Primary referenceIdentification of Benzoxazin-3-one Derivatives as Novel, Potent, and Selective Nonsteroidal Mineralocorticoid Receptor Antagonists., Hasui T, Matsunaga N, Ora T, Ohyabu N, Nishigaki N, Imura Y, Igata Y, Matsui H, Motoyaji T, Tanaka T, Habuka N, Sogabe S, Ono M, Siedem CS, Tang TP, Gauthier C, De Meese LA, Boyd SA, Fukumoto S, J Med Chem. 2011 Dec 22;54(24):8616-31. Epub 2011 Nov 29. PMID:22074142
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3vhv.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3VHV
  • CSU: Contacts of Structural Units for 3VHV
  • Structure Factors (920 Kb)
  • Retrieve 3VHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VHV from S2C, [Save to disk]
  • Re-refined 3vhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VHV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VHV, from MSDmotif at EBI
  • Fold representative 3vhv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vhv_A] [3vhv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VHV: [HOLI ] by SMART
  • Other resources with information on 3VHV
  • Community annotation for 3VHV at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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