3VJT	Transcription	date	Oct 31, 2011
title	Vitamin D Receptor Complex With A Carborane Compound
authors	S.Fujii, M.Masuno, H.Kagechika, M.Nakabayashi, N.Ito
compound		source
Molecule: Vitamin D3 Receptor Chain: A Fragment: Ligand-Binding Domain, Unp Residues 116-423 Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Vdr, Nr1i1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: Peptide From Mediator Of Rna Polymerase II Transc Subunit 1; Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.230 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 154.855 42.319 42.176 90.00 95.59 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	10R	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Boron cluster-based development of potent nonsecosteroidal vitamin D receptor ligands: direct observation of hydrophobic interaction between protein surface and carborane., Fujii S, Masuno H, Taoda Y, Kano A, Wongmayura A, Nakabayashi M, Ito N, Shimizu M, Kawachi E, Hirano T, Endo Y, Tanatani A, Kagechika H, J Am Chem Soc. 2011 Dec 28;133(51):20933-41. Epub 2011 Nov 30. PMID:22066785

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (3vjt.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 3VJT CSU: Contacts of Structural Units for 3VJT Structure Factors (144 Kb) Retrieve 3VJT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VJT from S2C, [Save to disk] Re-refined 3vjt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VJT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vjt_C] [3vjt] [3vjt_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VJT: [HOLI ] by SMART

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