3VPE	Hydrolase	date	Feb 29, 2012
title	Crystal Structure Of Metallo-Beta-Lactamase Smb-1
authors	J.Wachino, Y.Yamaguchi, S.Mori, Y.Arakawa, K.Shibayama
compound		source
Molecule: Metallo-Beta-Lactamase Chain: A Fragment: Unp Residues 19-280 Ec: 3.5.2.6 Engineered: Yes		Organism_scientific: Serratia Marcescens Organism_taxid: 615 Strain: 10mdr148 Gene: Blasmb-1, Smb-1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: P 31	R_factor 0.165 R_Free 0.200
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.829 67.829 48.670 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	ACT, GOL, SO4, ZN	enzyme	Hydrolase E.C.3.5.2.6 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into the subclass B3 metallo-beta-lactamase SMB-1 and the mode of inhibition by the common metallo-beta-lactamase inhibitor mercaptoacetate., Wachino J, Yamaguchi Y, Mori S, Kurosaki H, Arakawa Y, Shibayama K, Antimicrob Agents Chemother. 2013 Jan;57(1):101-9. doi: 10.1128/AAC.01264-12., Epub 2012 Oct 15. PMID:23070156

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (3vpe.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 3VPE CSU: Contacts of Structural Units for 3VPE Structure Factors (440 Kb) Retrieve 3VPE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VPE from S2C, [Save to disk] Re-refined 3vpe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VPE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VPE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VPE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vpe_A] [3vpe] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VPE: [Lactamase_B ] by SMART

Other resources with information on 3VPE

Community annotation for 3VPE at PDBWiki (http://pdbwiki.org)

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