3VPK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	CA, E4B, GHS	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of 6-guanidinohexanoyl trypsin near the optimum pH reveals the acyl-enzyme intermediate to be deacylated., Masuda Y, Nitanai Y, Mizutani R, Noguchi S, Proteins. 2013 Mar;81(3):526-30. doi: 10.1002/prot.24206. Epub 2012 Dec 24. PMID:23161653

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (3vpk.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 3VPK CSU: Contacts of Structural Units for 3VPK Structure Factors (287 Kb) Retrieve 3VPK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VPK from S2C, [Save to disk] Re-refined 3vpk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VPK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vpk] [3vpk_A] SWISS-PROT database: Domain found in 3VPK: [Tryp_SPc ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---