3VPP Crystal Structure of the Human CLEC9A C-type Lectin-Like Domain date
authors Czabotar, P.E., Zhang, J.G., Policheni, A.N., Shortman, K., Lahoud, M.H., Colman, P.M.
compound source
symmetry
R_factor
R_Free 0.2265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.64
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Dendritic Cell Receptor Clec9A Binds Damaged Cells via Exposed Actin Filaments., Zhang JG, Czabotar PE, Policheni AN, Caminschi I, San Wan S, Kitsoulis S, Tullett KM, Robin AY, Brammananth R, van Delft MF, Lu J, O'Reilly LA, Josefsson EC, Kile BT, Chin WJ, Mintern JD, Olshina MA, Wong W, Baum J, Wright MD, Huang DC, Mohandas N, Coppel RL, Colman PM, Nicola NA, Shortman K, Lahoud MH, Immunity. 2012 Apr 20;36(4):646-57. Epub 2012 Apr 5. PMID:22483802
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3vpp.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3vpp.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3VPP
  • CSU: Contacts of Structural Units for 3VPP
  • Structure Factors (272 Kb)
  • Retrieve 3VPP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VPP from S2C, [Save to disk]
  • Re-refined 3vpp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VPP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VPP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VPP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vpp] [3vpp_B] [3vpp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VPP: [CLECT ] by SMART
    • Other resources with information on 3VPP
  • Community annotation for 3VPP at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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