3VS8 Transferase date Apr 23, 2012
title Crystal Structure Of Type III Pks Arsc
authors R.Satou, A.Miyanaga, H.Ozawa, N.Funa, K.Miyazono, M.Tanokura, Y.Oh S.Horinouchi
compound source
Molecule: Type III Polyketide Synthase
Chain: A, B, C, D, E, F, G, H
Ec: 2.3.1.74
Engineered: Yes
 Organism_scientific: Azotobacter Vinelandii
Organism_taxid: 354
Strain: Op
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.318 143.388 129.623 90.00 110.33 90.00
method X-Ray Diffractionresolution 1.76 Å
ligand NA enzyme Transferase E.C.2.3.1.74 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructural basis for cyclization specificity of two Azotobacter type III polyketide synthases: a single amino acid substitution reverses their cyclization specificity., Satou R, Miyanaga A, Ozawa H, Funa N, Katsuyama Y, Miyazono KI, Tanokura M, Ohnishi Y, Horinouchi S, J Biol Chem. 2013 Oct 7. PMID:24100027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (905 Kb) [Save to disk]
  • Biological Unit Coordinates (3vs8.pdb1.gz) 233 Kb
  • Biological Unit Coordinates (3vs8.pdb2.gz) 222 Kb
  • Biological Unit Coordinates (3vs8.pdb3.gz) 232 Kb
  • Biological Unit Coordinates (3vs8.pdb4.gz) 230 Kb
  • LPC: Ligand-Protein Contacts for 3VS8
  • CSU: Contacts of Structural Units for 3VS8
  • Structure Factors (5156 Kb)
  • Retrieve 3VS8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VS8 from S2C, [Save to disk]
  • Re-refined 3vs8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VS8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VS8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VS8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vs8_H] [3vs8_G] [3vs8_F] [3vs8_E] [3vs8_B] [3vs8] [3vs8_D] [3vs8_C] [3vs8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VS8
  • Community annotation for 3VS8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science