3VSV date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand XYP, XYS enzyme
Primary referenceThe substrate/product-binding modes of a novel GH120 beta-xylosidase (XylC) from Thermoanaerobacterium saccharolyticum JW/SL-YS485., Huang CH, Sun Y, Ko TP, Chen CC, Zheng Y, Chan HC, Pang X, Wiegel J, Shao W, Guo RT, Biochem J. 2012 Dec 15;448(3):401-7. doi: 10.1042/BJ20121359. PMID:22992047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (486 Kb) [Save to disk]
  • Biological Unit Coordinates (3vsv.pdb1.gz) 479 Kb
  • LPC: Ligand-Protein Contacts for 3VSV
  • CSU: Contacts of Structural Units for 3VSV
  • Structure Factors (5620 Kb)
  • Retrieve 3VSV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VSV from S2C, [Save to disk]
  • Re-refined 3vsv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VSV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vsv] [3vsv_A] [3vsv_B] [3vsv_C] [3vsv_D]
  • SWISS-PROT database:
  • Domain found in 3VSV: [PbH1 ] by SMART

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