3VU5 Membrane Protein Inhibitor date Jun 19, 2012
title Short Peptide Hiv Entry Inhibitor Sc22ek
authors X.Yao, H.H.Chong, S.Waltersperger, M.T.Wang, Y.X.He, S.Cui
compound source
Molecule: Transmembrane Protein Gp41
Chain: A
Fragment: Unp Residues 553-590
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_common: Hiv-1
Organism_taxid: 11676

Molecule: Sc22
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Sequence Of Sc22 Does Not Occur Naturally In But Designed Based On Sequence Of Hiv-1 Gp41 Chr
symmetry Space Group: P 63 2 2
R_factor 0.233 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.281 45.281 183.218 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.09 Å
ligand ACE, NH2, NH4, SO4 enzyme
Primary referenceShort-peptide fusion inhibitors with high potency against wild-type and enfuvirtide-resistant HIV-1., Chong H, Yao X, Qiu Z, Sun J, Zhang M, Waltersperger S, Wang M, Liu SL, Cui S, He Y, FASEB J. 2013 Mar;27(3):1203-13. doi: 10.1096/fj.12-222547. Epub 2012 Dec 11. PMID:23233535
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (3vu5.pdb1.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 3VU5
  • CSU: Contacts of Structural Units for 3VU5
  • Structure Factors (117 Kb)
  • Retrieve 3VU5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VU5 from S2C, [Save to disk]
  • Re-refined 3vu5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VU5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VU5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VU5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vu5] [3vu5_B] [3vu5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VU5
  • Community annotation for 3VU5 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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