3VU7 Replication date Jun 20, 2012
title Crystal Structure Of Rev1-Rev7-Rev3 Ternary Complex
authors S.Kikuchi, K.Hara, T.Shimizu, M.Sato, H.Hashimoto
compound source
Molecule: Dna Repair Protein Rev1
Chain: H
Fragment: Unp Residues 1140-1251
Synonym: Alpha Integrin-Binding Protein 80, Aibp80, Rev1-Li Terminal Deoxycytidyl Transferase;
Ec: 2.7.7.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rev1, Rev1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Mitotic Spindle Assembly Checkpoint Protein Mad2b
Chain: C
Synonym: Mitotic Arrest Deficient 2-Like Protein 2, Mad2-Li 2, Rev7 Homolog, Hrev7;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mad2l2, Mad2b, Rev7
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Polymerase Zeta Catalytic Subunit
Chain: Z
Fragment: Unp Residues 1847-1898
Synonym: Protein Reversionless 3-Like, Rev3-Like, Hrev3
Ec: 2.7.7.7
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rev3l, Polz, Rev3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.189 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.070 75.070 123.307 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand
enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C
  • positive regulation of doubl...

  • Primary referenceStructural basis of recruitment of DNA polymerase zeta by interaction between REV1 and REV7 proteins., Kikuchi S, Hara K, Shimizu T, Sato M, Hashimoto H, J Biol Chem. 2012 Sep 28;287(40):33847-52. Epub 2012 Aug 2. PMID:22859296
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3vu7.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 3VU7
  • Structure Factors (143 Kb)
  • Retrieve 3VU7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VU7 from S2C, [Save to disk]
  • Re-refined 3vu7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VU7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VU7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VU7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vu7_Z] [3vu7] [3vu7_C] [3vu7_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VU7
  • Community annotation for 3VU7 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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