3VWW	Isomerase	date	Sep 03, 2012
title	Crystal Structure Of A0-Domain Of P5 From H. Sapiens
authors	K.Inaba, M.Suzuki
compound		source
Molecule: Protein Disulfide-Isomerase A6 Chain: A, B Fragment: A0 Domain, Unp Residues 25-140 Synonym: Endoplasmic Reticulum Protein 5, Er Protein 5, Erp Disulfide Isomerase P5, Thioredoxin Domain-Containing Prote Ec: 5.3.4.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdia6, Erp5, P5, Txndc7 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: C 1 2 1	R_factor 0.173 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.461 43.241 61.245 90.00 101.29 90.00
method	X-Ray Diffraction	resolution	1.93 Å
ligand	MLY, PO4	enzyme	Isomerase E.C.5.3.4.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding., Sato Y, Kojima R, Okumura M, Hagiwara M, Masui S, Maegawa K, Saiki M, Horibe T, Suzuki M, Inaba K, Sci Rep. 2013 Aug 16;3:2456. doi: 10.1038/srep02456. PMID:23949117

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk] Biological Unit Coordinates (3vww.pdb1.gz) 41 Kb Biological Unit Coordinates (3vww.pdb2.gz) 40 Kb Biological Unit Coordinates (3vww.pdb3.gz) 79 Kb LPC: Ligand-Protein Contacts for 3VWW CSU: Contacts of Structural Units for 3VWW Structure Factors (269 Kb) Retrieve 3VWW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VWW from S2C, [Save to disk] Re-refined 3vww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VWW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VWW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VWW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vww_B] [3vww_A] [3vww] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VWW

Community annotation for 3VWW at PDBWiki (http://pdbwiki.org)

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