3VXE date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand DPN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceNeutron and X-ray crystallographic analysis of the human alpha-thrombin-bivalirudin complex at pD 5.0: protonation states and hydration structure of the enzyme-product complex., Yamada T, Kurihara K, Ohnishi Y, Tamada T, Tomoyori K, Masumi K, Tanaka I, Kuroki R, Niimura N, Biochim Biophys Acta. 2013 Aug;1834(8):1532-8. doi: 10.1016/j.bbapap.2013.05.014., Epub 2013 May 25. PMID:23712263
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3vxe.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 3VXE
  • CSU: Contacts of Structural Units for 3VXE
  • Structure Factors (894 Kb)
  • Retrieve 3VXE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VXE from S2C, [Save to disk]
  • Re-refined 3vxe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VXE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vxe] [3vxe_H] [3vxe_I] [3vxe_J] [3vxe_L]
  • SWISS-PROT database:
  • Domain found in 3VXE: [Tryp_SPc ] by SMART

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