OCA Atlas for 3VXP

3VXP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
B, E		cellular response to iron io...

Primary reference

Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection., Shimizu A, Kawana-Tachikawa A, Yamagata A, Han C, Zhu D, Sato Y, Nakamura H, Koibuchi T, Carlson J, Martin E, Brumme CJ, Shi Y, Gao GF, Brumme ZL, Fukai S, Iwamoto A, Sci Rep. 2013 Nov 6;3:3097. doi: 10.1038/srep03097. PMID:24192765

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk]

Biological Unit Coordinates (3vxp.pdb1.gz) 66 Kb

Biological Unit Coordinates (3vxp.pdb2.gz) 67 Kb

CSU: Contacts of Structural Units for 3VXP

Structure Factors (512 Kb)

Retrieve 3VXP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3VXP from S2C, [Save to disk]

Re-refined 3vxp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VXP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vxp] [3vxp_A] [3vxp_B] [3vxp_C] [3vxp_D] [3vxp_E] [3vxp_F]

SWISS-PROT database:

Domain found in 3VXP: [IGc1 ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]