3VXU	Immune System	date	Sep 20, 2012
title	The Complex Between T36-5 Tcr And Hla-A24 Bound To Hiv-1 Nef Peptide
authors	A.Shimizu, S.Fukai, A.Yamagata, A.Iwamoto
compound		source
Molecule: Hla Class I Histocompatibility Antigen, A-24 Alph Chain: A, F Fragment: Unp Residues 25-298 Synonym: Aw-24, Hla Class I Histocompatibility Antigen, A-9 Chain, Mhc Class I Antigen A24; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hla-A Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21d(+)
Molecule: Beta-2-Microglobulin Chain: B, G Synonym: Beta-2-Microglobulin Form Pi 5.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a(+)
Molecule: 10-Mer Peptide From Protein Nef Chain: C, H Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Other_details: Synthetic Peptide
Molecule: T36-5 Tcr Alpha Chain Chain: D, I Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a(+)
Molecule: T36-5 Tcr Beta Chain Chain: E, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a(+)
symmetry	Space Group: P 32	R_factor 0.272 R_Free 0.323
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.162 73.162 415.663 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
Gene Ontology	Chain Function Process Component G, B cellular response to iron io...
Primary reference	Structure of TCR and antigen complexes at an immunodominant CTL epitope in HIV-1 infection., Shimizu A, Kawana-Tachikawa A, Yamagata A, Han C, Zhu D, Sato Y, Nakamura H, Koibuchi T, Carlson J, Martin E, Brumme CJ, Shi Y, Gao GF, Brumme ZL, Fukai S, Iwamoto A, Sci Rep. 2013 Nov 6;3:3097. doi: 10.1038/srep03097. PMID:24192765

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk] Biological Unit Coordinates (3vxu.pdb1.gz) 133 Kb Biological Unit Coordinates (3vxu.pdb2.gz) 135 Kb CSU: Contacts of Structural Units for 3VXU Structure Factors (645 Kb) Retrieve 3VXU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VXU from S2C, [Save to disk] Re-refined 3vxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VXU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VXU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VXU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vxu_E] [3vxu_A] [3vxu_B] [3vxu_D] [3vxu_J] [3vxu] [3vxu_H] [3vxu_G] [3vxu_I] [3vxu_C] [3vxu_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3VXU: [IG_like] [IGc1] [IGv ] by SMART

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