3VYQ | Hydrolase Dna | date | Oct 02, 2012 |
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title | Crystal Structure Of The Methyl Cpg Binding Domain Of Mbd4 I With The 5mcgtg Sequence In Space Group P1 | ||||||||||||||
authors | J.Otani, K.Arita, T.Kato, M.Kinoshita, M.Ariyoshi, M.Shirakawa | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Methyl-Cpg-Binding Domain Protein 4 Chain: A, D Fragment: Methyl Cpg Binding Domain, Unp Residues 63-136 Synonym: Methyl-Cpg-Binding Protein Mbd4, Mismatch-Specific Glycosylase; Ec: 3.2.2.- Engineered: Yes |
Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Mbd4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid | ||||||||||||||
Molecule: Dna (5'-D(Apcpaptpcp(5cm)Pgpgptpgpa)-3 Chain: B Engineered: Yes |
Synthetic: Yes | ||||||||||||||
Molecule: Dna (5'-D(Tpcpapcptpgpgpaptpgpt)-3') Chain: C Engineered: Yes |
Synthetic: Yes | ||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 2.53 Å | ||||||||||||
ligand | 5CM, EDO, ZN | enzyme | Hydrolase E.C.3.2.2 BRENDA | ||||||||||||
Gene Ontology |
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Primary reference | Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4., Otani J, Arita K, Kato T, Kinoshita M, Kimura H, Suetake I, Tajima S, Ariyoshi M, Shirakawa M, J Biol Chem. 2013 Mar 1;288(9):6351-62. doi: 10.1074/jbc.M112.431098. Epub 2013, Jan 10. PMID:23316048 |
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