3VYX	Hydrolase Rna	date	Oct 05, 2012
title	Structural Insights Into Risc Assembly Facilitated By Dsrna Domains Of Human Rna Helicase (Dhx9)
authors	Y.A.Yuan, Q.Fu
compound		source
Molecule: Atp-Dependent Rna Helicase A Chain: A Fragment: Unp Residues 152-264 Synonym: Rha, Deah Box Protein 9, Leukophysin, Lkp, Nuclear Helicase II, Ndh II; Ec: 3.6.4.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dhx9, Ddx9, Lkp, Ndh2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
Molecule: Rna (5'-R(Pgpcpgpcpgpcpgpcpgpc)-3') Chain: B, C Engineered: Yes		Synthetic: Yes Other_details: This Sequence Is Synthesized In Vitro.
symmetry	Space Group: P 43 21 2	R_factor 0.193 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 63.198 63.198 107.617 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.29 Å
ligand		enzyme	Hydrolase E.C.3.6.4.13 BRENDA
Primary reference	Structural insights into RISC assembly facilitated by dsRNA-binding domains of human RNA helicase A (DHX9)., Fu Q, Yuan YA, Nucleic Acids Res. 2013 Jan 29. PMID:23361462

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3vyx.pdb1.gz) 51 Kb CSU: Contacts of Structural Units for 3VYX Structure Factors (144 Kb) Retrieve 3VYX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VYX from S2C, [Save to disk] Re-refined 3vyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VYX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VYX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VYX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vyx_C] [3vyx_B] [3vyx] [3vyx_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VYX: [DSRM ] by SMART

Other resources with information on 3VYX

Community annotation for 3VYX at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---