3VZG	Sugar Binding Protein	date	Oct 11, 2012
title	Crystal Structure Of Human Pancreatic Secretory Protein Zg16 (Alpha-D-Mannosyl)-L-Threonine
authors	M.Kanagawa, Y.Yamaguchi
compound		source
Molecule: Zymogen Granule Membrane Protein 16 Chain: A Fragment: Unp Residues 21-159 Synonym: Zymogen Granule Protein 16, Hzg16, Secretory Lecti Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Zg16 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: E. Coli Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-I(Mbp Fusion)
symmetry	Space Group: P 21 21 2	R_factor 0.217 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.397 73.022 30.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, MAN, THR	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin., Kanagawa M, Liu Y, Hanashima S, Ikeda A, Chai W, Nakano Y, Kojima-Aikawa K, Feizi T, Yamaguchi Y, J Biol Chem. 2014 Jun 13;289(24):16954-65. doi: 10.1074/jbc.M113.539114. Epub, 2014 Apr 30. PMID:24790092

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk] Biological Unit Coordinates (3vzg.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 3VZG CSU: Contacts of Structural Units for 3VZG Structure Factors (30 Kb) Retrieve 3VZG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VZG from S2C, [Save to disk] Re-refined 3vzg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VZG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VZG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VZG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vzg_A] [3vzg] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VZG: [Jacalin ] by SMART

Other resources with information on 3VZG

Community annotation for 3VZG at PDBWiki (http://pdbwiki.org)

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