3W03 Dna Binding Protein date Oct 17, 2012
title Xlf-Xrcc4 Complex
authors Q.Wu, T.Ochi, D.Matak-Vinkovic, C.V.Robinson, D.Y.Chirgadze, T.L.
compound source
Molecule: Non-Homologous End-Joining Factor 1
Chain: A, B
Fragment: Unp Residues 1-233
Synonym: Protein Cernunnos, Xrcc4-Like Factor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nhej1, Xlf
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna Repair Protein Xrcc4
Chain: C, D
Fragment: Unp Residues 1-164
Synonym: X-Ray Repair Cross-Complementing Protein 4
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xrcc4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.363 R_Free 0.360
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.762 236.762 103.229 90.00 90.00 120.00
method X-Ray Diffractionresolution 8.49 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceNon-homologous end-joining partners in a helical dance: structural studies of XLF-XRCC4 interactions., Wu Q, Ochi T, Matak-Vinkovic D, Robinson CV, Chirgadze DY, Blundell TL, Biochem Soc Trans. 2011 Oct;39(5):1387-92, suppl 2 p following 1392. PMID:21936820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (271 Kb) [Save to disk]
  • Biological Unit Coordinates (3w03.pdb1.gz) 152 Kb
  • Biological Unit Coordinates (3w03.pdb2.gz) 115 Kb
  • CSU: Contacts of Structural Units for 3W03
  • Structure Factors (23 Kb)
  • Retrieve 3W03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W03 from S2C, [Save to disk]
  • View 3W03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W03
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W03, from MSDmotif at EBI
  • Fold representative 3w03 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w03_B] [3w03_C] [3w03_D] [3w03_A] [3w03]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3W03
  • Community annotation for 3W03 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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