3W04	Hydrolase	date	Oct 19, 2012
title	Crystal Structure Of Oryza Sativa Dwarf14 (D14)
authors	M.Kagiyama, Y.Hirano, T.Mori, S.Y.Kim, J.Kyozuka, Y.Seto, S.Yamagu T.Hakoshima
compound		source
Molecule: Dwarf 88 Esterase Chain: A, B Fragment: Unp Residues 55-318 Synonym: Hydrolase, Alphabeta Fold Family Protein, Express Os03g0203200 Protein; Engineered: Yes		Organism_scientific: Oryza Sativa Japonica Group Organism_common: Japanese Rice Organism_taxid: 39947 Gene: D88, Loc_os03g10620, Os03g0203200 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Star (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet47b
symmetry	Space Group: P 21 21 21	R_factor 0.160 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.988 88.191 121.231 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	EDO, EPE, MPD	enzyme
Gene	LOC
Primary reference	Structures of D14 and D14L in the strigolactone and karrikin signaling pathways., Kagiyama M, Hirano Y, Mori T, Kim SY, Kyozuka J, Seto Y, Yamaguchi S, Hakoshima T, Genes Cells. 2013 Jan 10. doi: 10.1111/gtc.12025. PMID:23301669

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (3w04.pdb1.gz) 47 Kb Biological Unit Coordinates (3w04.pdb2.gz) 48 Kb LPC: Ligand-Protein Contacts for 3W04 CSU: Contacts of Structural Units for 3W04 Structure Factors (506 Kb) Retrieve 3W04 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3W04 from S2C, [Save to disk] Re-refined 3w04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3W04, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3w04_B] [3w04] [3w04_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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