3W0T Lyase Lyase Inhibitor date Nov 02, 2012
title Human Glyoxalase I With An N-Hydroxypyridone Derivative Inhi
authors T.A.Fukami, M.Irie, T.Matsuura
compound source
Molecule: Lactoylglutathione Lyase
Chain: A, B, C, D
Synonym: Aldoketomutase, Glyoxalase I, Glx I, Ketone-Aldehy Methylglyoxalase, S-D-Lactoylglutathione Methylglyoxal Lyas
Ec: 4.4.1.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glo1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.570 81.030 68.620 90.00 90.13 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand EPE, HPU, ZN enzyme Lyase E.C.4.4.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk]
  • Biological Unit Coordinates (3w0t.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (3w0t.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3W0T
  • CSU: Contacts of Structural Units for 3W0T
  • Structure Factors (2336 Kb)
  • Retrieve 3W0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W0T from S2C, [Save to disk]
  • Re-refined 3w0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W0T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W0T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w0t] [3w0t_D] [3w0t_A] [3w0t_C] [3w0t_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3W0T
  • Community annotation for 3W0T at PDBWiki (http://pdbwiki.org)

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