3W13 Hormone Receptor Hormone Immune System date Nov 06, 2012
title Insulin Receptor Ectodomain Construct Comprising Domains L1- Complex With High-Affinity Insulin Analogue [D-Pro-B26]-Dti Alphact Peptide(693-719) And Fab 83-7
authors M.C.Lawrence, B.J.Smith, A.M.Brzozowski
compound source
Molecule: Insulin Receptor Domains L1-Cr
Chain: E
Fragment: Unp Residues 28-337
Synonym: Insulin Receptor L1-Cr (Ir310.T), Insulin Receptor Alpha;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Insr
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Lec8 Mutant
Expression_system_cell: Cho Cell

Molecule: Monoclonal Antibody Fab 83-7 Fragment - Heavy Cha
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell

Molecule: Monoclonal Antibody Fab 83-7 Fragment - Light Cha
Chain: D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Mus Musculus
Expression_system_common: Mouse
Expression_system_taxid: 10090
Expression_system_cell: Hybridoma Cell

Molecule: Insulin A Chain
Chain: A
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Semi-Synthetic Modification Of Porcine Insul Derived From Porcine Pancreas;

Molecule: Insulin B Chain
Chain: B
Fragment: Unp Residues 25-50
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Semi-Synthetic Modification Of Porcine Insul Derived From Porcine Pancreas;

Molecule: Insulin Receptor Alphact Peptide
Chain: F
Fragment: Unp Residues 724-746
Synonym: Insulin Receptor Subunit Alpha
Ec: 2.7.10.1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesis
symmetry Space Group: P 2 3
R_factor 0.289 R_Free 0.335
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.228 169.228 169.228 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.30 Å
ligand BMA, MAN, NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


E


Primary referenceHow insulin engages its primary binding site on the insulin receptor., Menting JG, Whittaker J, Margetts MB, Whittaker LJ, Kong GK, Smith BJ, Watson CJ, Zakova L, Kletvikova E, Jiracek J, Chan SJ, Steiner DF, Dodson GG, Brzozowski AM, Weiss MA, Ward CW, Lawrence MC, Nature. 2013 Jan 10;493(7431):241-5. doi: 10.1038/nature11781. PMID:23302862
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (3w13.pdb1.gz) 200 Kb
  • LPC: Ligand-Protein Contacts for 3W13
  • CSU: Contacts of Structural Units for 3W13
  • Structure Factors (171 Kb)
  • Retrieve 3W13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W13 from S2C, [Save to disk]
  • Re-refined 3w13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W13
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W13, from MSDmotif at EBI
  • Fold representative 3w13 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w13_B] [3w13_C] [3w13_D] [3w13] [3w13_F] [3w13_A] [3w13_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3W13: [FU] [IGv] [IlGF ] by SMART
  • Other resources with information on 3W13
  • Community annotation for 3W13 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
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