3W5N	Hydrolase	date	Jan 31, 2013
title	Crystal Structure Of Streptomyces Avermitilis Alpha-L-Rhamno Complexed With L-Rhamnose
authors	Z.Fujimoto, A.Jackson, M.Michikawa, T.Maehara, M.Momma, B.F.Henri H.J.Gilbert, S.Kaneko
compound		source
Molecule: Putative Rhamnosidase Chain: A Synonym: Alpha-L-Rhamnosidase Ec: 3.2.1.40 Engineered: Yes		Organism_scientific: Streptomyces Avermitilis Organism_taxid: 227882 Strain: Ma-4680 Gene: Sav_828 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Tuner(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30
symmetry	Space Group: P 1 21 1	R_factor 0.163 R_Free 0.194
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.063 128.559 75.260 90.00 99.85 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CA, MPD, NA, RAM	enzyme	Hydrolase E.C.3.2.1.40 BRENDA
Gene	SAV
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of a Streptomyces avermitilis alpha-L-rhamnosidase reveals a novel carbohydrate-binding module CBM67 within the six-domain arrangement., Fujimoto Z, Jackson A, Michikawa M, Maehara T, Momma M, Henrissat B, Gilbert HJ, Kaneko S, J Biol Chem. 2013 Apr 26;288(17):12376-85. doi: 10.1074/jbc.M113.460097. Epub, 2013 Mar 13. PMID:23486481

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (3w5n.pdb1.gz) 179 Kb LPC: Ligand-Protein Contacts for 3W5N CSU: Contacts of Structural Units for 3W5N Structure Factors (2051 Kb) Retrieve 3W5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3W5N from S2C, [Save to disk] Re-refined 3w5n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3W5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3W5N

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3W5N, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3w5n] [3w5n_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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