3W6R Signaling Protein date Feb 21, 2013
title Crystal Structure Of The Gap Domain Of Human Mgcracgap
authors A.Matsuura, H.H.Lee
compound source
Molecule: Rac Gtpase-Activating Protein 1
Chain: A
Fragment: Rho-Gap Domain, Unp Residues 348-546
Synonym: Male Germ Cell Racgap, Mgcracgap, Protein Cyk4 Hom Hscyk-4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Racgap1, Kiaa1478, Mgcracgap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.222 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.466 63.159 74.078 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of GTPase-activating domain from human MgcRacGAP., Matsuura A, Lee HH, Biochem Biophys Res Commun. 2013 Jun 7;435(3):367-72. doi:, 10.1016/j.bbrc.2013.04.094. Epub 2013 May 7. PMID:23665020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (3w6r.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 3W6R
  • Structure Factors (220 Kb)
  • Retrieve 3W6R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W6R from S2C, [Save to disk]
  • Re-refined 3w6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W6R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W6R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W6R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w6r_A] [3w6r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W6R: [RhoGAP ] by SMART
  • Other resources with information on 3W6R
  • Community annotation for 3W6R at PDBWiki (http://pdbwiki.org)

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