3W79 Oxidoreductase date Feb 27, 2013
title Crystal Structure Of Azoreductase Azrc In Complex With Sulfo Modified Azo Dye Orange I
authors D.Ogata, J.Yu, T.Ooi, M.Yao
compound source
Molecule: Fmn-Dependent Nadh-Azoreductase
Chain: A, B, C, D
Synonym: Azo-Dye Reductase, Fmn-Dependent Nadh-Azo Compound Oxidoreductase;
Ec: 1.7.-.-
Engineered: Yes
 Organism_scientific: Bacillus
Organism_taxid: 391699
Strain: B29
Gene: Azrc, Azor
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.214 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
191.144 56.567 105.096 90.00 115.72 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand FMN, ORI enzyme Oxidoreductase E.C.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • electron transfer activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (3w79.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (3w79.pdb2.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 3W79
  • CSU: Contacts of Structural Units for 3W79
  • Structure Factors (899 Kb)
  • Retrieve 3W79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W79 from S2C, [Save to disk]
  • Re-refined 3w79 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3W79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3W79
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W79, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w79_D] [3w79] [3w79_A] [3w79_B] [3w79_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3W79
  • Community annotation for 3W79 at PDBWiki (http://pdbwiki.org)

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