3W8R Transferase date Mar 21, 2013
title Mutant Structure Of Thermus Thermophilus Hb8 Uridine-Cytidin
authors F.Tomoike, N.Nakagawa, R.Masui, S.Kuramitsu
compound source
Molecule: Uridine Kinase
Chain: A, B
Synonym: Cytidine Monophosphokinase, Uridine Monophosphokin
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Ttha0578, Udk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet 11a
symmetry Space Group: P 21 21 2
R_factor 0.221 R_Free 0.283
length a length b length c angle alpha angle beta angle gamma
68.300 124.100 60.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand ACP, CTN enzyme Transferase E.C. BRENDA
A, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (3w8r.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 3W8R
  • CSU: Contacts of Structural Units for 3W8R
  • Structure Factors (211 Kb)
  • Retrieve 3W8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W8R from S2C, [Save to disk]
  • Re-refined 3w8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W8R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W8R, from MSDmotif at EBI
  • Fold representative 3w8r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w8r_A] [3w8r_B] [3w8r]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3W8R: [AAA ] by SMART
  • Other resources with information on 3W8R
  • Community annotation for 3W8R at PDBWiki (http://pdbwiki.org)

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