3W96 Crystal Structure of Human Nucleosome Core Particle lacking H2A N-terminal region date
authors Iwasaki, W., Miya, Y., Horikoshi, N., Osakabe, A., Tachiwana, H., Shibata, T., Kagawa, W., Kurumizaka, H.
compound source
R_Free 0.296
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
ligand CL, MN enzyme
A, E

C, G

F, B

H, D

Primary referenceContribution of histone N-terminal tails to the structure and stability of nucleosomes., Iwasaki W, Miya Y, Horikoshi N, Osakabe A, Taguchi H, Tachiwana H, Shibata T, Kagawa W, Kurumizaka H, FEBS Open Bio. 2013 Aug 22;3:363-9. doi: 10.1016/j.fob.2013.08.007. PMID:24251097
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (3w96.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 3W96
  • CSU: Contacts of Structural Units for 3W96
  • Structure Factors (329 Kb)
  • Retrieve 3W96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W96 from S2C, [Save to disk]
  • Re-refined 3w96 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W96, from MSDmotif at EBI
  • Fold representative 3w96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w96_A] [3w96] [3w96_J] [3w96_E] [3w96_B] [3w96_C] [3w96_D] [3w96_H] [3w96_F] [3w96_G] [3w96_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3W96: [H2A] [H2B] [H3] [H4 ] by SMART
  • Other resources with information on 3W96
  • Community annotation for 3W96 at PDBWiki (http://pdbwiki.org)

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