3WAM Crystal structure of human LC3C_8-125 date
authors Suzuki, H., Tabata, K., Morita, E., Kawasaki, M., Kato, R., Dobson, R.C.J., Yoshimori, T., Wakatsuki, S.
compound source
symmetry
R_factor
R_Free 0.21129
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.75
ligand CIT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of the Autophagy-Related LC3/Atg13 LIR Complex: Recognition and Interaction Mechanism., Suzuki H, Tabata K, Morita E, Kawasaki M, Kato R, Dobson RC, Yoshimori T, Wakatsuki S, Structure. 2013 Nov 25. pii: S0969-2126(13)00401-2. doi:, 10.1016/j.str.2013.09.023. PMID:24290141
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3wam.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3wam.pdb2.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3WAM
  • CSU: Contacts of Structural Units for 3WAM
  • Structure Factors (737 Kb)
  • Retrieve 3WAM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WAM from S2C, [Save to disk]
  • Re-refined 3wam structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WAM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WAM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WAM, from MSDmotif at EBI
  • Fold representative 3wam from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wam_A] [3wam]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3WAM
  • Community annotation for 3WAM at PDBWiki (http://pdbwiki.org)

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