3WBQ	Carbohydrate Binding Protein	date	May 20, 2013
title	Crystal Structure Of Carbohydrate Recognition Domain Of Bloo Dendritic Cell Antigen-2 (Bdca2) Lectin (Crystal Form-2)
authors	M.Nagae, A.Ikeda, Y.Kitago, N.Matsumoto, K.Yamamoto, Y.Yamaguchi
compound		source
Molecule: C-Type Lectin Domain Family 4 Member C Chain: A, B Fragment: Unp Residues 83-210 Synonym: Blood Dendritic Cell Antigen 2, Bdca-2, C-Type Lec Superfamily Member 7, Dendritic Lectin; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bdca2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-Tev Vector
symmetry	Space Group: C 1 2 1	R_factor 0.236 R_Free 0.293
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.185 37.324 70.957 90.00 116.93 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Primary reference	Crystal structures of carbohydrate recognition domain of blood dendritic cell antigen-2 (BDCA2) reveal a common domain-swapped dimer., Nagae M, Ikeda A, Kitago Y, Matsumoto N, Yamamoto K, Yamaguchi Y, Proteins. 2013 Dec 27. doi: 10.1002/prot.24504. PMID:24425442

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (3wbq.pdb1.gz) 42 Kb CSU: Contacts of Structural Units for 3WBQ Structure Factors (708 Kb) Retrieve 3WBQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WBQ from S2C, [Save to disk] Re-refined 3wbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WBQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WBQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WBQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wbq] [3wbq_B] [3wbq_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WBQ: [CLECT ] by SMART

Other resources with information on 3WBQ

Community annotation for 3WBQ at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---