3WD9 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CA, QPC, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceSynthesis and biological evaluation of 5-carbamoyl-2-phenylpyrimidine derivatives as novel and potent PDE4 inhibitors., Goto T, Shiina A, Yoshino T, Mizukami K, Hirahara K, Suzuki O, Sogawa Y, Takahashi T, Mikkaichi T, Nakao N, Takahashi M, Hasegawa M, Sasaki S, Bioorg Med Chem. 2013 Nov 15;21(22):7025-37. doi: 10.1016/j.bmc.2013.09.013. Epub, 2013 Sep 19. PMID:24094436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (3wd9.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3wd9.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3WD9
  • CSU: Contacts of Structural Units for 3WD9
  • Structure Factors (816 Kb)
  • Retrieve 3WD9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WD9 from S2C, [Save to disk]
  • Re-refined 3wd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WD9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wd9] [3wd9_A] [3wd9_B]
  • SWISS-PROT database:
  • Domain found in 3WD9: [HDc ] by SMART

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