3WDX	Hydrolase	date	Jun 25, 2013
title	The Complex Structure Of E113a With Glucotriose
authors	Y.S.Cheng, C.H.Huang, C.C.Chen, T.Y.Huang, T.P.Ko, J.W.Huang, T.H. J.R.Liu, R.T.Guo
compound		source
Molecule: Beta-1,3-1,4-Glucanase Chain: A, B Fragment: Unp Residues 19-314 Synonym: Ptlic16a Ec: 3.2.1.73 Engineered: Yes Mutation: Yes		Organism_scientific: Paecilomyces Organism_common: Paecilomyces Thermophila Organism_taxid: 566408 Strain: J18 Expression_system: Komagataella Pastoris Expression_system_taxid: 4922 Expression_system_strain: X33 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppiczalphaa
symmetry	Space Group: C 1 2 1	R_factor 0.177 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 114.149 93.575 75.393 90.00 117.60 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	BGC, GLC	enzyme	Hydrolase E.C.3.2.1.73 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural and mutagenetic analyses of a 1,3-1,4-beta-glucanase from Paecilomyces thermophila., Cheng YS, Huang CH, Chen CC, Huang TY, Ko TP, Huang JW, Wu TH, Liu JR, Guo RT, Biochim Biophys Acta. 2014 Feb;1844(2):366-73. doi: 10.1016/j.bbapap.2013.11.005., Epub 2013 Nov 18. PMID:24262091

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (3wdx.pdb1.gz) 53 Kb Biological Unit Coordinates (3wdx.pdb2.gz) 54 Kb LPC: Ligand-Protein Contacts for 3WDX CSU: Contacts of Structural Units for 3WDX Structure Factors (542 Kb) Retrieve 3WDX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WDX from S2C, [Save to disk] Re-refined 3wdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WDX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WDX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WDX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wdx] [3wdx_B] [3wdx_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WDX

Community annotation for 3WDX at PDBWiki (http://pdbwiki.org)

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