3WE2 Dna Binding Protein date Jun 28, 2013
title Structure Of Blm Rqc Domain Bound To A Phosphate Ion
authors S.Y.Kim, T.Hakoshima, K.Kitano
compound source
Molecule: Bloom Syndrome Protein
Chain: A, B
Fragment: Recq C-Terminal (Rqc) Domain, Unp Residues 1068-1
Synonym: Blm, Dna Helicase, Recq-Like Type 2, Recq2, Recq P Like 3;
Ec: 3.6.4.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Blm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-3
symmetry Space Group: P 43 21 2
R_factor 0.237 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.218 59.218 210.146 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ACT, PO4 enzyme Hydrolase E.C.3.6.4.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the RecQ C-terminal Domain of Human Bloom Syndrome Protein., Kim SY, Hakoshima T, Kitano K, Sci Rep. 2013 Nov 21;3:3294. doi: 10.1038/srep03294. PMID:24257077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (3we2.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3we2.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 3WE2
  • CSU: Contacts of Structural Units for 3WE2
  • Structure Factors (135 Kb)
  • Retrieve 3WE2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WE2 from S2C, [Save to disk]
  • Re-refined 3we2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WE2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WE2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WE2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3we2, region E:12-115,E:218-395 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3we2_B] [3we2] [3we2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WE2: [RQC ] by SMART
  • Other resources with information on 3WE2
  • Community annotation for 3WE2 at PDBWiki (http://pdbwiki.org)

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