3WGE	Isomerase	date	Aug 04, 2013
title	Crystal Structure Of Erp46 Trx2
authors	K.Inaba, M.Suzuki, R.Kojima
compound		source
Molecule: Thioredoxin Domain-Containing Protein 5 Chain: A Fragment: Trx2 Domain, Unp Residues 190-298 Synonym: Erp46, Endoplasmic Reticulum Resident Protein 46, 46, Thioredoxin-Like Protein P46; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Txndc5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3)Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Poptg
symmetry	Space Group: P 21 21 21	R_factor 0.122 R_Free 0.135
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.580 39.060 87.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	0.95 Å
ligand	GOL	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Radically different thioredoxin domain arrangement of ERp46, an efficient disulfide bond introducer of the mammalian PDI family., Kojima R, Okumura M, Masui S, Kanemura S, Inoue M, Saiki M, Yamaguchi H, Hikima T, Suzuki M, Akiyama S, Inaba K, Structure. 2014 Mar 4;22(3):431-43. doi: 10.1016/j.str.2013.12.013. Epub 2014 Jan, 23. PMID:24462249

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (3wge.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 3WGE CSU: Contacts of Structural Units for 3WGE Structure Factors (1176 Kb) Retrieve 3WGE in mmCIF format [Save to disk] Re-refined 3wge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WGE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WGE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WGE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wge] [3wge_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WGE

Community annotation for 3WGE at PDBWiki (http://pdbwiki.org)

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