3WHK	Hydrolase	date	Aug 26, 2013
title	Crystal Structure Of Pan-Rpt5c Chimera
authors	T.Satoh, Y.Saeki, T.Hiromoto, Y.H.Wang, Y.Uekusa, H.Yagi, H.Yoshi M.Yagi-Utsumi, T.Mizushima, K.Tanaka, K.Kato
compound		source
Molecule: Proteasome-Activating Nucleotidase, 26s Protease Subunit 6a; Chain: A, B, C, D, E, F, G, H Synonym: Pan, Proteasomal Atpase, Proteasome Regulatory Atp Proteasome Regulatory Particle, Tat-Binding Protein Homolog Engineered: Yes Other_details: Fusion Protein Of Residues 125-309 From Prot Activating Nucleotidase (Pan, Unp Q8u4h3), Linker (Ef), And 356-434 From 26s Protease Regulatory Subunit 6a (Rpt5, Unp		Organism_scientific: Pyrococcus Furiosus, Saccharomyces Cer Organism_common: Yeast Organism_taxid: 186497, 559292 Strain: Dsm 3638, S288c Gene: Pan, Pf0115, O3258, Rpt5, Yor117w, Yor3258w, Yta1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28b
symmetry	Space Group: P 1	R_factor 0.242 R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.040 85.760 105.260 90.04 90.03 89.89
method	X-Ray Diffraction	resolution	2.60 Å
ligand	ATP	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Structural Basis for Proteasome Formation Controlled by an Assembly Chaperone Nas2., Satoh T, Saeki Y, Hiromoto T, Wang YH, Uekusa Y, Yagi H, Yoshihara H, Yagi-Utsumi M, Mizushima T, Tanaka K, Kato K, Structure. 2014 Mar 25. pii: S0969-2126(14)00070-7. doi:, 10.1016/j.str.2014.02.014. PMID:24685148

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (319 Kb) [Save to disk] Biological Unit Coordinates (3whk.pdb1.gz) 43 Kb Biological Unit Coordinates (3whk.pdb2.gz) 42 Kb Biological Unit Coordinates (3whk.pdb3.gz) 42 Kb Biological Unit Coordinates (3whk.pdb4.gz) 43 Kb Biological Unit Coordinates (3whk.pdb5.gz) 43 Kb Biological Unit Coordinates (3whk.pdb6.gz) 43 Kb Biological Unit Coordinates (3whk.pdb7.gz) 43 Kb Biological Unit Coordinates (3whk.pdb8.gz) 43 Kb LPC: Ligand-Protein Contacts for 3WHK CSU: Contacts of Structural Units for 3WHK Structure Factors (1444 Kb) Retrieve 3WHK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WHK from S2C, [Save to disk] Re-refined 3whk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WHK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WHK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WHK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3whk_D] [3whk] [3whk_A] [3whk_E] [3whk_B] [3whk_F] [3whk_H] [3whk_G] [3whk_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WHK: [AAA ] by SMART

Other resources with information on 3WHK

Community annotation for 3WHK at PDBWiki (http://pdbwiki.org)

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