3WP0 Peptide Binding Protein date Jan 08, 2014
title Crystal Structure Of Dlg Gk In Complex With A Phosphor-Lgl2
authors J.Zhu, Y.Shang, Q.Wan, Y.Xia, J.Chen, Q.Du, M.Zhang
compound source
Molecule: Disks Large Homolog 4
Chain: A
Fragment: Unp Residues 533-713
Synonym: Postsynaptic Density Protein 95, Psd-95, Synapse-A Protein 90, Sap-90, Sap90;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Gene: Dlg4, Dlgh4, Psd95
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lethal(2) Giant Larvae Protein Homolog 2
Chain: B
Fragment: Unp Residues 640-654
Synonym: Hgl
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Llgl2
symmetry Space Group: P 31 2 1
R_factor 0.166 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.082 84.082 65.883 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.04 Å
ligand GOL, SEP enzyme
Primary referencePhosphorylation-dependent interaction between tumor suppressors Dlg and Lgl., Zhu J, Shang Y, Wan Q, Xia Y, Chen J, Du Q, Zhang M, Cell Res. 2014 Feb 11. doi: 10.1038/cr.2014.16. PMID:24513855
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (3wp0.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 3WP0
  • CSU: Contacts of Structural Units for 3WP0
  • Structure Factors (254 Kb)
  • Retrieve 3WP0 in mmCIF format [Save to disk]
  • Re-refined 3wp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WP0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WP0, from MSDmotif at EBI
  • Fold representative 3wp0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wp0_A] [3wp0_B] [3wp0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WP0: [GuKc ] by SMART
  • Other resources with information on 3WP0
  • Community annotation for 3WP0 at PDBWiki (http://pdbwiki.org)

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