3WU1	Transcription Dna	date	Apr 21, 2014
title	Crystal Structure Of The Ets1-Runx1-Dna Ternary Complex
authors	T.H.Tahirov, K.Ogata
compound		source
Molecule: Runt-Related Transcription Factor 1 Chain: A Fragment: Unp Residues 55-177 Synonym: Acute Myeloid Leukemia 1 Protein, Core-Binding Fac Subunit Alpha-2, Cbf-Alpha-2, Oncogene Aml-1, Polyomavirus Binding Protein 2 Alpha B Subunit, Pea2-Alpha B, Pebp2-Alph Enhancer Factor 1 Alpha B Subunit, Sl3akv Core-Binding Fac B Subunit; Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Aml1, Cbfa2, Pebp2ab, Runx1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
Molecule: Protein C-Ets-1 Chain: B Fragment: Unp Residues 333-441 Synonym: P54 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ets1, Ewsr2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23a
Molecule: Dna (5'-D(Gpgpapapgpcpcpapcpaptpcpcp 3'); Chain: C Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'-D(Cpapgpapgpgpaptpgptpgpgpcp 3'); Chain: D Engineered: Yes		Synthetic: Yes
symmetry	Space Group: C 2 2 21	R_factor 0.213 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.278 140.902 95.768 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
Gene Ontology	Chain Function Process Component A B
Primary reference	A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions., Shiina M, Hamada K, Inoue-Bungo T, Shimamura M, Uchiyama A, Baba S, Sato K, Yamamoto M, Ogata K, J Mol Biol. 2014 Jul 29. pii: S0022-2836(14)00368-4. doi:, 10.1016/j.jmb.2014.07.020. PMID:25083921

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3wu1.pdb1.gz) 53 Kb CSU: Contacts of Structural Units for 3WU1 Structure Factors (385 Kb) Retrieve 3WU1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WU1 from S2C, [Save to disk] Re-refined 3wu1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WU1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WU1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WU1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wu1_D] [3wu1_A] [3wu1_C] [3wu1] [3wu1_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WU1: [ETS ] by SMART

Other resources with information on 3WU1

Community annotation for 3WU1 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---