3WUS	Hydrolase	date	May 02, 2014
title	Crystal Structure Of The Vif-Binding Domain Of Human Apobec3
authors	M.Nakashima, T.Kawamura, H.Ode, N.Watanabe, Y.Iwatani
compound		source
Molecule: Dna Dc->Du-Editing Enzyme Apobec-3f Chain: A, B Fragment: C-Terminal Domain, Unp Residues 187-373 Synonym: Apolipoprotein B Mrna-Editing Enzyme Catalytic Pol Like 3f, A3f; Ec: 3.5.4.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Apobec3f Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta2(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet41a(+)
symmetry	Space Group: P 31 2 1	R_factor 0.200 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.294 117.294 78.960 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	ZN	enzyme	Hydrolase E.C.3.5.4 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural Insights into HIV-1 Vif-APOBEC3F Interaction., Nakashima M, Ode H, Kawamura T, Kitamura S, Naganawa Y, Awazu H, Tsuzuki S, Matsuoka K, Nemoto M, Hachiya A, Sugiura W, Yokomaku Y, Watanabe N, Iwatani Y, J Virol. 2015 Nov 4;90(2):1034-47. doi: 10.1128/JVI.02369-15. PMID:26537685

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (3wus.pdb1.gz) 33 Kb Biological Unit Coordinates (3wus.pdb2.gz) 33 Kb LPC: Ligand-Protein Contacts for 3WUS CSU: Contacts of Structural Units for 3WUS Structure Factors (399 Kb) Retrieve 3WUS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WUS from S2C, [Save to disk] Re-refined 3wus structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3WUS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wus_B] [3wus] [3wus_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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