3WUZ Membrane Protein date May 10, 2014
title Crystal Structure Of The Ig V-Set Domain Of Human Paired Immunoglobulin-Like Type 2 Receptor Alpha
authors K.Kuroki, J.Wang, T.Ose, M.Yamaguchi, S.Tabata, N.Maita, S.Nakamur M.Kajikawa, A.Kogure, T.Satoh, H.Arase, K.Maenaka
compound source
Molecule: Paired Immunoglobulin-Like Type 2 Receptor Alpha
Chain: A
Fragment: V-Set Domain, Unp Residues 32-150
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pilra
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgmt7
symmetry Space Group: P 21 21 21
R_factor 0.145 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.334 44.942 56.873 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CIT, IPA enzyme
Primary referenceStructural basis for simultaneous recognition of an O-glycan and its attached peptide of mucin family by immune receptor PILRalpha., Kuroki K, Wang J, Ose T, Yamaguchi M, Tabata S, Maita N, Nakamura S, Kajikawa M, Kogure A, Satoh T, Arase H, Maenaka K, Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8877-82. doi:, 10.1073/pnas.1324105111. Epub 2014 Jun 2. PMID:24889612
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3wuz.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3WUZ
  • CSU: Contacts of Structural Units for 3WUZ
  • Structure Factors (473 Kb)
  • Retrieve 3WUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WUZ from S2C, [Save to disk]
  • Re-refined 3wuz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WUZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WUZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wuz_A] [3wuz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WUZ: [IG ] by SMART
  • Other resources with information on 3WUZ
  • Community annotation for 3WUZ at PDBWiki (http://pdbwiki.org)

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