OCA Atlas for 3WVP

3WVP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

GOL, MN

enzyme

Gene

Gene
Ontology

Chain	Function	Process	Component
A, B, C, D	nuclease activity endonuclease activity

Primary reference

Analysis of the HindIII-catalyzed reaction by time-resolved crystallography., Kawamura T, Kobayashi T, Watanabe N, Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):256-65. doi:, 10.1107/S1399004714025188. Epub 2015 Jan 23. PMID:25664735

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]

Biological Unit Coordinates (3wvp.pdb1.gz) 114 Kb

Biological Unit Coordinates (3wvp.pdb2.gz) 114 Kb

Biological Unit Coordinates (3wvp.pdb3.gz) 114 Kb

Biological Unit Coordinates (3wvp.pdb4.gz) 114 Kb

Biological Unit Coordinates (3wvp.pdb5.gz) 13 Kb

Biological Unit Coordinates (3wvp.pdb6.gz) 13 Kb

LPC: Ligand-Protein Contacts for 3WVP

CSU: Contacts of Structural Units for 3WVP

Structure Factors (1686 Kb)

Retrieve 3WVP in mmCIF format [Save to disk]

Re-refined 3wvp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WVP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wvp] [3wvp_A] [3wvp_B] [3wvp_C] [3wvp_D] [3wvp_E] [3wvp_F] [3wvp_G] [3wvp_H] [3wvp_I] [3wvp_J] [3wvp_K] [3wvp_L] [3wvp_M] [3wvp_N] [3wvp_O] [3wvp_P] [3wvp_Q] [3wvp_R] [3wvp_S] [3wvp_T]

SWISS-PROT database:

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