3WWQ	Protein Binding Metal Binding Protein	date	Jun 23, 2014
title	Crystal Structure Of Faap20 Ubz Domain In Complex With Lys63 Diubiquitin
authors	Y.Sato, S.Fukai
compound		source
Molecule: Ubiquitin Chain: A, D, G, J Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: Ubiquitin Chain: B, E, H, K Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet26b
Molecule: Fanconi Anemia-Associated Protein Of 20 Kda Chain: C, F, I, L Fragment: Ubz Domain, Unp Residues 142-180 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: C1orf86, Faap20, Fp7162 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Rosetta (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcold-Gst
symmetry	Space Group: P 1 21 1	R_factor 0.208 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.767 45.850 172.900 90.00 98.06 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component F, C, I, L
Primary reference	Structural basis for ubiquitin recognition by ubiquitin-binding zinc finger of FAAP20., Toma A, Takahashi TS, Sato Y, Yamagata A, Goto-Ito S, Nakada S, Fukuto A, Horikoshi Y, Tashiro S, Fukai S, PLoS One. 2015 Mar 23;10(3):e0120887. doi: 10.1371/journal.pone.0120887., eCollection 2015. PMID:25799058

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk] Biological Unit Coordinates (3wwq.pdb1.gz) 65 Kb Biological Unit Coordinates (3wwq.pdb2.gz) 64 Kb Biological Unit Coordinates (3wwq.pdb3.gz) 64 Kb Biological Unit Coordinates (3wwq.pdb4.gz) 64 Kb LPC: Ligand-Protein Contacts for 3WWQ CSU: Contacts of Structural Units for 3WWQ Structure Factors (1728 Kb) Retrieve 3WWQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WWQ from S2C, [Save to disk] Re-refined 3wwq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WWQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WWQ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WWQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wwq_D] [3wwq_K] [3wwq_E] [3wwq_H] [3wwq_F] [3wwq_B] [3wwq_A] [3wwq_J] [3wwq_C] [3wwq] [3wwq_G] [3wwq_I] [3wwq_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WWQ: [UBQ ] by SMART

Other resources with information on 3WWQ

Community annotation for 3WWQ at PDBWiki (http://pdbwiki.org)

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