3WXW Membrane Protein Immune System date Aug 11, 2014
title Crystal Structure Of The Human Adiponectin Receptor 2
authors H.Tanabe, Y.Fujii, Y.Nakamura, T.Hosaka, M.Okada-Iwabu, M.Iwabu, T Someya, M.Shirouzu, T.Yamauchi, T.Kadowaki, S.Yokoyama
compound source
Molecule: Adiponectin Receptor Protein 2
Chain: A
Fragment: Unp Residues 100-386
Synonym: Membrane Protein 2, Progestin And Adipoq Receptor Member II;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adipor2, Paqr2
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111

Molecule: V Region Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: E.Coli Cell-Free Protein Synthesis

Molecule: V Region Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: E.Coli Cell-Free Protein Synthesis
symmetry Space Group: P 21 2 21
R_factor 0.248 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.580 101.030 108.630 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the human adiponectin receptors., Tanabe H, Fujii Y, Okada-Iwabu M, Iwabu M, Nakamura Y, Hosaka T, Motoyama K, Ikeda M, Wakiyama M, Terada T, Ohsawa N, Hato M, Ogasawara S, Hino T, Murata T, Iwata S, Hirata K, Kawano Y, Yamamoto M, Kimura-Someya T, Shirouzu M, Yamauchi T, Kadowaki T, Yokoyama S, Nature. 2015 Apr 16;520(7547):312-6. doi: 10.1038/nature14301. Epub 2015 Apr 8. PMID:25855295
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (3wxw.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 3WXW
  • CSU: Contacts of Structural Units for 3WXW
  • Structure Factors (292 Kb)
  • Retrieve 3WXW in mmCIF format [Save to disk]
  • Re-refined 3wxw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WXW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WXW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WXW, from MSDmotif at EBI
  • Fold representative 3wxw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wxw_L] [3wxw] [3wxw_H] [3wxw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WXW: [IGv ] by SMART
  • Other resources with information on 3WXW
  • Community annotation for 3WXW at PDBWiki (http://pdbwiki.org)

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