3WYR Immune System date Sep 07, 2014
title Crystal Structure Of Killer Cell Immunoglobulin-Like Recepto
authors J.P.Vivian, S.Moradi, J.Rossjohn
compound source
Molecule: Killer Cell Immunoglobulin-Like Receptor 2dl4
Chain: A, B
Fragment: Extracellular Domain, Unp Residues 24-218
Synonym: Cd158 Antigen-Like Family Member D, G9p, Killer Ce Inhibitory Receptor 103as, Kir-103as, Mhc Class I Nk Cell R Kir103as;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kir2dl4, Cd158d, Kir103as
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek 293s
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 4 21 2
R_factor 0.211 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.836 87.836 105.996 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3wyr.pdb1.gz) 246 Kb
  • LPC: Ligand-Protein Contacts for 3WYR
  • CSU: Contacts of Structural Units for 3WYR
  • Structure Factors (593 Kb)
  • Retrieve 3WYR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WYR from S2C, [Save to disk]
  • Re-refined 3wyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WYR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WYR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WYR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wyr_B] [3wyr] [3wyr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WYR: [IG ] by SMART
  • Other resources with information on 3WYR
  • Community annotation for 3WYR at PDBWiki (http://pdbwiki.org)

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