3WYW Transferase date Sep 09, 2014
title Structural Characterization Of Catalytic Site Of A Nilaparva Delta-Class Glutathione Transferase
authors K.Yamamoto, A.Higashiura, A.Nakagawa
compound source
Molecule: Glutathione S-Transferase
Chain: A, B
Synonym: Glutathione S-Transferase D2
 Organism_scientific: Nilaparvata Lugens
Organism_common: Brown Planthopper
Organism_taxid: 108931
symmetry Space Group: P 1 21 1
R_factor 0.175 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.552 49.104 74.184 90.00 99.90 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, GSH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase., Yamamoto K, Higashiura A, Hossain MT, Yamada N, Shiotsuki T, Nakagawa A, Arch Biochem Biophys. 2014 Dec 9;566C:36-42. doi: 10.1016/j.abb.2014.12.001. PMID:25497345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3wyw.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3WYW
  • CSU: Contacts of Structural Units for 3WYW
  • Structure Factors (803 Kb)
  • Retrieve 3WYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WYW from S2C, [Save to disk]
  • Re-refined 3wyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WYW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WYW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wyw_B] [3wyw_A] [3wyw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WYW
  • Community annotation for 3WYW at PDBWiki (http://pdbwiki.org)

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