3WZ1	Hydrolase	date	Sep 12, 2014
title	Catalytic Domain Of Beta-Agarase From Microbulbifer Thermoto Jamb-A94
authors	E.Takagi, Y.Hatada, M.Akita, Y.Ohta, G.Yokoi, T.Miyazaki, A.Nishik T.Tonozuka
compound		source
Molecule: Agarase Chain: A Fragment: Unp Residues 19-300 Synonym: Beta-Agarase Ec: 3.2.1.81 Engineered: Yes		Organism_scientific: Microbulbifer Thermotolerans Organism_taxid: 252514 Strain: Jamb-A94 Gene: Agaa Expression_system: Bacillus Subtilis Expression_system_taxid: 1423 Expression_system_strain: Isw1214 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pexbs
symmetry	Space Group: P 21 21 21	R_factor 0.152 R_Free 0.165
crystal cell	length a length b length c angle alpha angle beta angle gamma 49.624 69.394 90.367 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	GOL, NA	enzyme	Hydrolase E.C.3.2.1.81 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the catalytic domain of a GH16 beta-agarase from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94., Takagi E, Hatada Y, Akita M, Ohta Y, Yokoi G, Miyazaki T, Nishikawa A, Tonozuka T, Biosci Biotechnol Biochem. 2015 Apr;79(4):625-32. doi:, 10.1080/09168451.2014.988680. Epub 2014 Dec 6. PMID:25483365

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk] Biological Unit Coordinates (3wz1.pdb1.gz) 49 Kb LPC: Ligand-Protein Contacts for 3WZ1 CSU: Contacts of Structural Units for 3WZ1 Structure Factors (450 Kb) Retrieve 3WZ1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WZ1 from S2C, [Save to disk] Re-refined 3wz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WZ1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WZ1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WZ1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wz1_A] [3wz1] SWISS-PROT database: Domain organization of by SWISSPFAM

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