3WZU Transferase Transferase Inhibitor date Oct 07, 2014
title The Structure Of Map2k7 In Complex With 5z-7-Oxozeaenol
authors Y.Sogabe, Y.Hashimoto, T.Matsumoto, T.Kinoshita
compound source
Molecule: Dual Specificity Mitogen-Activated Protein Kinase
Chain: A
Fragment: Map Kinase Kinase 7, Unp Residues 120-418
Synonym: Map Kinase Kinase 7, Mapkk 7, Jnk-Activating Kinas Mapkerk Kinase 7, Mek 7, Stress-Activated Protein Kinase K Sapk Kinase 4, Sapkk-4, Sapkk4, C-Jun N-Terminal Kinase Kin Kinase 2, Jnkk 2;
Ec: 2.7.12.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map2k7, Jnkk2, Mek7, Mkk7, Prkmk7, Skk4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.236 R_Free 0.322
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.395 71.395 268.817 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.01 Å
ligand 1FM enzyme Transferase E.C.2.7.12.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference5Z-7-Oxozeaenol covalently binds to MAP2K7 at Cys218 in an unprecedented manner., Sogabe Y, Matsumoto T, Hashimoto T, Kirii Y, Sawa M, Kinoshita T, Bioorg Med Chem Lett. 2014 Dec 13. pii: S0960-894X(14)01308-0. doi:, 10.1016/j.bmcl.2014.12.011. PMID:25529738
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (3wzu.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3WZU
  • CSU: Contacts of Structural Units for 3WZU
  • Structure Factors (158 Kb)
  • Retrieve 3WZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WZU from S2C, [Save to disk]
  • Re-refined 3wzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WZU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3WZU, from MSDmotif at EBI
  • Fold representative 3wzu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wzu] [3wzu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WZU: [S_TKc ] by SMART
  • Other resources with information on 3WZU
  • Community annotation for 3WZU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science