3WZY Oxidoreductase date Oct 08, 2014
title S266a Mutant 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis Mr-1 At 580mpa - Complex With Ipm And Mg
authors T.Nagae, N.Watanabe
compound source
Molecule: 3-Isopropylmalate Dehydrogenase
Chain: A
Synonym: 3-Ipm-Dh, Beta-Ipm Dehydrogenase, Imdh
Ec: 1.1.1.85
Engineered: Yes
Mutation: Yes
Organism_scientific: Shewanella Oneidensis Mr-1
Organism_taxid: 211586
Gene: Leub, So_4235
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Codonplus(De3) Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe80
symmetry Space Group: C 1 2 1
R_factor 0.185 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.314 57.417 75.362 90.00 118.81 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand IPM, MG enzyme Oxidoreductase E.C.1.1.1.85 BRENDA
Gene SO
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3wzy.pdb1.gz) 122 Kb
  • LPC: Ligand-Protein Contacts for 3WZY
  • CSU: Contacts of Structural Units for 3WZY
  • Structure Factors (1031 Kb)
  • Retrieve 3WZY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WZY from S2C, [Save to disk]
  • Re-refined 3wzy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3WZY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3WZY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wzy_A] [3wzy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3WZY: [Iso_dh ] by SMART
  • Other resources with information on 3WZY
  • Community annotation for 3WZY at PDBWiki (http://pdbwiki.org)

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