3X04	Transferase	date	Oct 09, 2014
title	Crystal Structure Of Pip4kiibeta Complex With Gmppnp
authors	K.Takeuchi, Y.H.Lo, K.Sumita, M.Senda, J.Terakawa, A.Dimitoris, J.W.Locasale, M.Sasaki, H.Yoshino, Y.Zhang, E.R.Kahoud, T.Takano T.Yokota, B.Emerling, J.A.Asara, T.Ishida, I.Shimada, T.Daikoku, L.C.Cantley, T.Senda, A.T.Sasaki
compound		source
Molecule: Phosphatidylinositol 5-Phosphate 4-Kinase Type-2 Chain: A, B Fragment: Unp Residues 31-416 Synonym: 1-Phosphatidylinositol 5-Phosphate 4-Kinase 2-Beta Diphosphoinositide Kinase 2-Beta, Phosphatidylinositol 5-Ph Kinase Type II Beta, Pi(5)P 4-Kinase Type II Beta, Pip4kii- Ptdins(5)P-4-Kinase Isoform 2-Beta; Ec: 2.7.1.149 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pip4k2b Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.229 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.804 185.222 106.449 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	GNP	enzyme	Transferase E.C.2.7.1.149 BRENDA
Gene Ontology	Chain Function Process Component A, B phosphatidylinositol phospha... 1-phosphatidylinositol-4-pho... 1-phosphatidylinositol-5-pho...
Primary reference	The Lipid Kinase PI5P4Kbeta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis., Sumita K, Lo YH, Takeuchi K, Senda M, Kofuji S, Ikeda Y, Terakawa J, Sasaki M, Yoshino H, Majd N, Zheng Y, Kahoud ER, Yokota T, Emerling BM, Asara JM, Ishida T, Locasale JW, Daikoku T, Anastasiou D, Senda T, Sasaki AT, Mol Cell. 2016 Jan 21;61(2):187-98. doi: 10.1016/j.molcel.2015.12.011. Epub 2016 , Jan 7. PMID:26774281

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk] Biological Unit Coordinates (3x04.pdb1.gz) 216 Kb LPC: Ligand-Protein Contacts for 3X04 CSU: Contacts of Structural Units for 3X04 Structure Factors (517 Kb) Retrieve 3X04 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3X04 from S2C, [Save to disk] Re-refined 3x04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3x04_A] [3x04_B] [3x04] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3X04: [PIPKc ] by SMART

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